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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
ATAC-seq
18
snATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
56
Transcription
18
DNA accessibility
Date released
May, 2021
45
May, 2020
16
January, 2021
12
February, 2023
6
May, 2022
Available data
51
bam
45
bigWig
45
tsv
6
fastq
6
txt
Organism
79
Homo sapiens
Biosample type
53
primary cell
21
tissue
5
cell line
Organ
21
pancreas
8
blood
8
bodily fluid
Project
73
T1D
6
AMP
Genome assembly (visualization)
45
GRCh38
45
hg19
Lab
3389
AMP-T2D consortium
275
Klaus Kaestner, Upenn
79
Kyle Gaulton, UCSD
67
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
37
Bing Ren, UCSD
20
Karen Mohlke, UNC
18
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
2
Struan F.A. Grant, CHOP
1
ITG
Audit category:
4
inconsistent ontology term
assay_title!
ATAC-seq
month_released!
May, 2021
November, 2019
BIOSAMPLE
ASSAY
79 results
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total RNA-seq
snATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
peripheral blood mononuclear cell
8
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
+ See 21 more…
tissue
islet of Langerhans
11
6
pancreas
4
cell line
EndoC_BH1
3
2
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