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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
115
total RNA-seq
ATAC-seq
18
snATAC-seq
15
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
154
DNA binding
115
Transcription
18
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
228
May, 2021
45
May, 2020
16
January, 2021
12
February, 2023
6
May, 2022
Available data
215
bigWig
186
bam
114
bed narrowPeak
96
tsv
84
tagAlign
6
fastq
6
txt
2
bed bed3+
Organism
307
Homo sapiens
Biosample type
238
primary cell
42
in vitro differentiated cells
22
tissue
5
cell line
Organ
22
pancreas
8
blood
8
bodily fluid
1
bone element
bone marrow
1
connective tissue
thymus
Project
223
T1D
84
AMP
Genome assembly (visualization)
215
hg19
180
GRCh38
Lab
3568
AMP-T2D consortium
307
Kyle Gaulton, UCSD
219
Klaus Kaestner, Upenn
67
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
37
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
Audit category:
5
inconsistent ontology term
assay_title!
ATAC-seq
month_released!
September, 2020
organ_slims!
bone marrow
thymus
BIOSAMPLE
ASSAY
307 results
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Clear Filters
ChIP-seq
total RNA-seq
snATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
53
1
CD8-positive, alpha-beta T cell
33
4
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
+ See 30 more…
in vitro differentiated cells
embryonic stem cell
37
5
tissue
islet of Langerhans
11
6
pancreas
1
4
cell line
EndoC_BH1
3
2
See all biosamples
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