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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
115
total RNA-seq
ATAC-seq
20
ChIP-seq
18
snATAC-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
115
Transcription
20
DNA binding
18
DNA accessibility
Target of assay
134
histone
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
96
May, 2021
45
May, 2020
16
January, 2021
12
February, 2023
6
May, 2022
Available data
102
bam
101
bigWig
96
tsv
6
fastq
6
txt
2
bed bed3+
Organism
175
Homo sapiens
Biosample type
125
primary cell
23
tissue
22
in vitro differentiated cells
5
cell line
Organ
22
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
141
T1D
34
AMP
Genome assembly (visualization)
101
hg19
96
GRCh38
Lab
2723
AMP-T2D consortium
275
Klaus Kaestner, Upenn
175
Kyle Gaulton, UCSD
67
Katalin Susztak, Upenn
47
KPMP
34
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
5
Patrick T. Ellinor, Broad
4
Anna Gloyn, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
Audit category:
5
inconsistent ontology term
assay_title!
ATAC-seq
organ_slims!
gonad
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
175 results
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total RNA-seq
ChIP-seq
snATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
1
CD8-positive, alpha-beta T cell
4
3
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
+ See 31 more…
tissue
islet of Langerhans
11
6
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
5
17
cell line
EndoC_BH1
3
2
See all biosamples
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