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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
ATAC-seq
14
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
56
Transcription
14
DNA binding
4
DNA accessibility
Target of assay
20
histone
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
58
February, 2021
7
October, 2019
3
May, 2019
2
August, 2021
2
February, 2020
July, 2019
2
June, 2019
Available data
70
bam
61
bigWig
56
tsv
9
bed narrowPeak
6
tagAlign
5
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
74
Homo sapiens
Biosample type
58
cell line
16
tissue
Organ
655
liver
637
pancreas
563
connective tissue
441
adipose tissue
315
epithelium
238
kidney
228
heart
147
bone element
109
vasculature
105
blood vessel
78
brain
74
artery
67
blood
67
bodily fluid
60
limb
52
musculature of body
29
eye
25
embryo
20
lung
18
nerve
18
spleen
18
ureter
7
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
74
AMP
Genome assembly (visualization)
61
GRCh38
61
hg19
Lab
74
AMP-T2D consortium
assay_title!
ATAC-seq
month_released!
July, 2019
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
74 results
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total RNA-seq
ChIP-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
6
tissue
tibial artery
1
5
2
coronary artery
1
3
2
pulmonary artery
2
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