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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
ATAC-seq
29
ChIP-seq
9
DNase-seq
6
single cell RNA-seq
3
Hi-C
1
FAIRE-seq
1
pCHi-C
Assay category
62
Transcription
29
DNA binding
10
DNA accessibility
3
3D chromatin structure
Target of assay
70
histone
histone modification
45
broad histone mark
25
narrow histone mark
21
control
8
transcription factor
4
RNA binding protein
Date released
58
February, 2021
14
May, 2019
13
October, 2019
July, 2019
6
August, 2021
5
June, 2019
4
March, 2020
3
February, 2020
2
November, 2017
Available data
92
bam
72
bigWig
63
tsv
18
bed narrowPeak
14
bigBed narrowPeak
10
bed broadPeak
10
bigBed broadPeak
9
bed bed3+
6
tagAlign
3
hic
2
bedpe bed3+
2
fastq
1
tar
Organism
105
Homo sapiens
Biosample type
58
cell line
36
tissue
11
primary cell
Organ
655
liver
637
pancreas
563
connective tissue
441
adipose tissue
315
epithelium
238
kidney
228
heart
147
bone element
109
vasculature
105
blood vessel
78
brain
74
artery
67
blood
67
bodily fluid
60
limb
52
musculature of body
29
eye
25
embryo
20
lung
18
nerve
18
spleen
18
ureter
7
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
105
AMP
Genome assembly (visualization)
74
hg19
70
GRCh38
Lab
105
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
ATAC-seq
month_released!
July, 2019
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
105 results
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total RNA-seq
ChIP-seq
DNase-seq
single cell RNA-seq
Hi-C
FAIRE-seq
pCHi-C
cell line
smooth muscle cell of the coronary artery
52
6
tissue
aorta
1
2
4
1
1
tibial artery
1
5
2
ascending aorta
1
4
1
coronary artery
1
3
2
thoracic aorta
5
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primary cell
endothelial cell of umbilical vein
2
2
2
1
brain microvascular endothelial cell
2
1
kidney capillary endothelial cell
1
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