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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
DNase-seq
17
ChIP-seq
ATAC-seq
7
total RNA-seq
Assay category
36
DNA accessibility
17
DNA binding
7
Transcription
Target of assay
49
histone
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
32
June, 2019
24
October, 2019
July, 2019
3
February, 2020
1
May, 2019
Available data
57
bam
40
bigWig
36
bed bed3+
36
bed broadPeak
36
bed narrowPeak
36
bigBed broadPeak
36
bigBed narrowPeak
7
tsv
Organism
60
Homo sapiens
Biosample type
60
tissue
Organ
655
liver
637
pancreas
563
connective tissue
441
adipose tissue
315
epithelium
238
kidney
228
heart
147
bone element
109
vasculature
105
blood vessel
78
brain
74
artery
67
blood
67
bodily fluid
60
limb
52
musculature of body
29
eye
25
embryo
20
lung
18
nerve
18
spleen
18
ureter
7
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
60
AMP
Genome assembly (visualization)
40
GRCh38
40
hg19
Lab
60
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
ATAC-seq
month_released!
July, 2019
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
60 results
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DNase-seq
ChIP-seq
total RNA-seq
tissue
tibial nerve
2
11
5
muscle of arm
17
muscle of leg
13
1
tibial artery
2
5
1
forelimb muscle
1
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