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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
5
DNase-seq
5
Hi-C
5
total RNA-seq
4
single cell RNA-seq
2
WGBS
ATAC-seq
1
FAIRE-seq
1
pCHi-C
Assay category
65
DNA binding
9
Transcription
6
DNA accessibility
5
3D chromatin structure
2
DNA methylation
Target of assay
50
histone
50
histone modification
31
broad histone mark
19
narrow histone mark
12
control
3
RNA binding protein
3
transcription factor
Date released
45
May, 2019
21
October, 2019
7
July, 2019
4
August, 2021
4
March, 2020
3
June, 2019
3
November, 2017
1
February, 2020
Available data
77
bam
64
bigWig
54
bed narrowPeak
54
bigBed narrowPeak
10
tsv
9
bed broadPeak
9
bigBed broadPeak
7
bed bed3+
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
88
Homo sapiens
Biosample type
59
tissue
29
primary cell
Organ
793
pancreas
768
liver
659
connective tissue
485
adipose tissue
420
epithelium
346
heart
282
brain
279
kidney
190
vasculature
184
blood vessel
147
bone element
114
limb
artery
95
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
88
AMP
Genome assembly (visualization)
65
hg19
58
GRCh38
Lab
88
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
ATAC-seq
month_released!
June, 2018
organ_slims!
artery
BIOSAMPLE
ASSAY
88 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
single cell RNA-seq
WGBS
FAIRE-seq
pCHi-C
tissue
aorta
13
1
1
4
2
1
ascending aorta
16
1
2
thoracic aorta
16
2
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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