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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
215
ChIP-seq
17
total RNA-seq
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
DNase-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
215
DNA binding
24
Transcription
3
3D chromatin structure
3
DNA accessibility
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
RNA binding protein
3
transcription factor
Date released
88
November, 2017
85
October, 2019
June, 2019
28
May, 2019
17
July, 2019
15
October, 2017
12
February, 2020
2
March, 2020
2
November, 2018
Available data
208
bam
187
bigWig
170
bed narrowPeak
118
tagAlign
94
bigBed narrowPeak
26
tsv
17
fastq
14
bed broadPeak
5
bed bed3+
5
bigBed broadPeak
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
249
Homo sapiens
Biosample type
236
tissue
13
primary cell
Organ
781
pancreas
708
liver
632
connective tissue
479
adipose tissue
395
epithelium
301
heart
249
brain
196
kidney
178
vasculature
175
blood vessel
147
bone element
93
artery
82
limb
58
blood
58
bodily fluid
52
musculature of body
42
nerve
37
embryo
26
eye
24
spleen
22
vein
20
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
249
AMP
Genome assembly (visualization)
182
GRCh38
140
hg19
Lab
249
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
ATAC-seq
month_released!
June, 2019
organ_slims!
thymus
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
249 results
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ChIP-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
DNase-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
20
1
2
1
layer of hippocampus
23
substantia nigra
16
1
temporal lobe
15
1
1
caudate nucleus
15
1
+ See 70 more…
primary cell
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
cerebellar granule cell
2
Purkinje cell
1
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