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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
529
ChIP-seq
189
total RNA-seq
ATAC-seq
5
WGBS
4
DNase-seq
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
529
DNA binding
193
Transcription
7
DNA methylation
4
3D chromatin structure
4
DNA accessibility
1
DNA sequencing
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
chromatin remodeller
2
other context
2
other post-translational modification
Date released
300
November, 2017
194
May, 2020
60
December, 2017
53
August, 2017
48
November, 2018
35
August, 2021
20
May, 2022
10
July, 2019
6
October, 2019
5
December, 2019
5
January, 2019
3
March, 2020
2
February, 2021
June, 2019
1
December, 2018
1
February, 2020
Available data
653
bam
576
bigWig
441
fastq
393
bed narrowPeak
332
bigBed narrowPeak
174
tsv
86
tagAlign
57
bed broadPeak
57
bigBed broadPeak
11
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
csv
1
hdf5
1
vcf
Organism
743
Homo sapiens
Biosample type
380
cell line
338
tissue
14
in vitro differentiated cells
11
primary cell
Organ
790
pancreas
743
liver
639
connective tissue
484
adipose tissue
400
epithelium
311
heart
252
brain
198
kidney
183
vasculature
179
blood vessel
147
bone element
94
artery
82
limb
58
blood
58
bodily fluid
52
musculature of body
42
nerve
37
embryo
26
eye
24
spleen
22
vein
20
lung
5
gonad
5
ovary
4
skeleton
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
743
AMP
Genome assembly (visualization)
577
hg19
505
GRCh38
Lab
692
AMP-T2D consortium
31
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
25
inconsistent control
Audit category:
7
missing controlled_by
Audit category:
16
inconsistent control read length
assay_title!
ATAC-seq
month_released!
June, 2019
organ_slims!
intestine
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
743 results
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ChIP-seq
total RNA-seq
WGBS
DNase-seq
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
358
14
1
2
2
2
1
tissue
liver
143
167
3
2
1
1
1
1
1
right lobe of liver
10
3
1
2
2
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
4
5
1
endothelial cell of hepatic sinusoid
1
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