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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
460
total RNA-seq
85
RNA microarray
73
ChIP-seq
ATAC-seq
6
WGBS
3
pCHi-C
3
small RNA-seq
2
DNase-seq
Assay category
463
Transcription
73
DNA binding
6
DNA methylation
2
DNA accessibility
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
528
February, 2021
56
August, 2017
23
October, 2018
12
July, 2019
4
February, 2023
2
February, 2020
1
August, 2018
1
August, 2021
1
June, 2019
1
March, 2020
1
May, 2021
1
May, 2023
1
November, 2018
Available data
497
bam
479
bigWig
459
tsv
88
txt
42
fastq
9
bed narrowPeak
8
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
631
Homo sapiens
Biosample type
628
tissue
3
primary cell
1
in vitro differentiated cells
Organ
779
pancreas
762
liver
658
connective tissue
485
adipose tissue
387
epithelium
338
heart
249
kidney
197
brain
147
bone element
144
vasculature
138
blood vessel
95
musculature of body
71
artery
68
blood
68
bodily fluid
47
limb
37
embryo
24
spleen
20
lung
18
ureter
13
eye
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
631
AMP
1
T1D
Genome assembly (visualization)
479
GRCh38
478
hg19
Lab
631
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
ATAC-seq
month_released!
October, 2019
BIOSAMPLE
ASSAY
632 results
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total RNA-seq
RNA microarray
ChIP-seq
WGBS
pCHi-C
small RNA-seq
DNase-seq
tissue
adipose tissue
382
2
3
1
bone element
84
bone tissue
58
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
1
12
1
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primary cell
mesenchymal stem cell of adipose
1
1
megakaryocyte
1
in vitro differentiated cells
white fat cell
1
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