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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
547
ChIP-seq
250
total RNA-seq
84
RNA microarray
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
4
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
547
DNA binding
254
Transcription
7
DNA methylation
6
DNA accessibility
4
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
108
control
98
histone modification
97
histone
82
recombinant protein
58
RNA binding protein
58
narrow histone mark
39
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
144
February, 2021
63
December, 2017
53
August, 2017
53
November, 2018
35
August, 2021
20
May, 2022
10
July, 2019
October, 2019
5
December, 2019
5
January, 2019
4
February, 2023
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
1
May, 2021
Available data
730
bam
653
bigWig
464
fastq
413
bed narrowPeak
357
bigBed narrowPeak
231
tsv
88
txt
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
csv
1
hdf5
1
vcf
Organism
909
Homo sapiens
Biosample type
480
tissue
400
cell line
15
in vitro differentiated cells
14
primary cell
Organ
779
pancreas
762
liver
658
connective tissue
485
adipose tissue
387
epithelium
338
heart
249
kidney
197
brain
147
bone element
144
vasculature
138
blood vessel
95
musculature of body
71
artery
68
blood
68
bodily fluid
47
limb
37
embryo
24
spleen
20
lung
18
ureter
13
eye
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
908
AMP
1
T1D
Genome assembly (visualization)
654
hg19
580
GRCh38
Lab
857
AMP-T2D consortium
31
Bing Ren, UCSD
20
Karen Mohlke, UNC
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_title!
ATAC-seq
month_released!
October, 2019
organ_slims!
spinal cord
BIOSAMPLE
ASSAY
909 results
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ChIP-seq
total RNA-seq
RNA microarray
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
140
166
2
3
1
1
1
1
1
bone element
84
bone tissue
58
right lobe of liver
10
3
2
1
2
acetabular part of hip bone
1
+ See 3 more…
cell line
HepG2
378
14
1
2
2
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
megakaryocyte
1
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