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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
104
ChIP-seq
19
total RNA-seq
10
MeRIP-seq
ATAC-seq
1
DNase-seq
Assay category
104
DNA binding
19
Transcription
1
DNA accessibility
Target of assay
76
histone
76
histone modification
45
broad histone mark
31
narrow histone mark
27
control
6
transcription factor
5
nucleotide modification
4
RNA binding protein
Date released
693
February, 2021
406
August, 2017
406
November, 2017
365
May, 2021
292
October, 2019
243
August, 2021
241
May, 2020
218
June, 2019
168
July, 2018
May, 2022
120
May, 2019
102
February, 2023
102
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
November, 2020
15
October, 2017
10
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
August, 2022
1
March, 2019
Available data
123
bam
101
bigWig
82
bed narrowPeak
65
bigBed narrowPeak
39
fastq
19
tsv
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
134
Homo sapiens
Biosample type
84
tissue
39
in vitro differentiated cells
6
cell line
5
primary cell
Organ
57
heart
23
kidney
13
embryo
10
pancreas
6
epithelium
5
connective tissue
Project
134
AMP
Genome assembly (visualization)
101
hg19
100
GRCh38
Lab
124
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
Audit category:
2
inconsistent control read length
assay_title!
ATAC-seq
month_released!
May, 2022
BIOSAMPLE
ASSAY
134 results
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Clear Filters
ChIP-seq
total RNA-seq
MeRIP-seq
DNase-seq
tissue
heart left ventricle
35
kidney
23
heart right ventricle
13
heart
9
islet of Langerhans
4
in vitro differentiated cells
pancreatic endoderm
9
4
definitive endodermal cell
3
2
embryonic stem cell
3
2
endocrine cell
3
2
posterior foregut
3
2
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cell line
EndoC_BH1
6
primary cell
osteoblast
4
1
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