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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
130
ChIP-seq
ATAC-seq
3
single cell RNA-seq
1
pCHi-C
Assay category
193
Transcription
130
DNA binding
Target of assay
87
histone
87
histone modification
50
narrow histone mark
37
broad histone mark
37
control
6
transcription factor
4
RNA binding protein
Date released
406
November, 2017
365
May, 2021
350
August, 2017
307
February, 2021
292
October, 2019
242
August, 2021
241
May, 2020
217
June, 2019
168
July, 2018
123
May, 2022
120
May, 2019
102
February, 2023
94
December, 2017
90
July, 2019
87
November, 2018
80
April, 2019
59
March, 2020
59
September, 2018
56
September, 2020
53
October, 2018
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
30
January, 2019
23
February, 2020
19
April, 2020
16
January, 2021
15
November, 2020
15
October, 2017
10
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
3
May, 2023
1
August, 2022
1
March, 2019
Available data
320
bam
283
bigWig
192
tsv
92
bed narrowPeak
64
bigBed narrowPeak
50
tagAlign
3
fastq
Organism
324
Homo sapiens
Biosample type
273
tissue
50
primary cell
1
cell line
Organ
194
liver
57
heart
23
kidney
1
epithelium
1
pancreas
Project
279
AMP
45
T1D
Genome assembly (visualization)
283
hg19
274
GRCh38
Lab
279
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
5
inconsistent ontology term
assay_title!
ATAC-seq
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
324 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
pCHi-C
tissue
liver
143
50
heart left ventricle
35
kidney
23
heart right ventricle
13
heart
9
primary cell
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
+ See 25 more…
cell line
HepG2
1
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