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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
9
WGBS
6
RRBS
4
DNase-seq
ATAC-seq
Assay category
70
DNA binding
15
DNA methylation
4
DNA accessibility
Target of assay
133
histone modification
histone
77
broad histone mark
54
narrow histone mark
40
transcription factor
29
control
6
RNA binding protein
3
chromatin remodeller
Date released
661
February, 2021
318
November, 2017
219
August, 2021
214
May, 2020
June, 2019
182
May, 2021
96
July, 2019
89
August, 2017
88
October, 2019
81
November, 2018
76
May, 2022
63
December, 2017
57
February, 2023
50
March, 2020
47
September, 2023
40
September, 2020
35
December, 2018
27
May, 2019
24
February, 2020
23
February, 2018
23
January, 2019
23
October, 2018
20
April, 2019
19
April, 2020
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2021
5
January, 2018
5
March, 2023
5
May, 2024
5
November, 2020
4
May, 2023
3
October, 2017
2
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
Available data
67
fastq
62
bam
47
bigWig
27
bed narrowPeak
14
bed bed3+
9
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
5
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
Organism
89
Homo sapiens
Biosample type
52
tissue
31
in vitro differentiated cells
6
primary cell
Organ
pancreas
55
connective tissue
24
adipose tissue
21
liver
12
epithelium
7
musculature of body
Project
89
AMP
Genome assembly (visualization)
51
hg19
45
GRCh38
Lab
89
AMP-T2D consortium
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
assay_title!
ATAC-seq
month_released!
June, 2019
organ_slims!
pancreas
target.investigated_as!
histone
BIOSAMPLE
ASSAY
89 results
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Clear Filters
ChIP-seq
WGBS
RRBS
DNase-seq
tissue
liver
16
3
1
white adipose tissue
12
subcutaneous abdominal adipose tissue
5
3
skeletal muscle tissue
3
4
adipose tissue
1
3
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in vitro differentiated cells
adipocyte
30
1
primary cell
skeletal muscle myoblast
3
1
2
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