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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
ATAC-seq
73
total RNA-seq
43
ChIP-seq
6
snATAC-seq
5
STARR-seq
2
Capture-C
2
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
179
Transcription
43
DNA binding
6
DNA accessibility
2
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
661
February, 2021
406
November, 2017
320
May, 2021
273
October, 2019
241
May, 2020
239
August, 2021
221
August, 2017
214
June, 2019
118
May, 2019
96
July, 2019
94
December, 2017
81
November, 2018
80
April, 2019
76
May, 2022
57
February, 2023
48
March, 2020
47
September, 2023
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2018
19
April, 2020
15
October, 2017
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2021
5
January, 2018
5
March, 2023
5
November, 2020
4
May, 2023
2
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
Available data
122
tsv
57
txt
45
bigWig
39
bam
30
bed narrowPeak
24
tagAlign
5
bed bed3+
2
hic
1
bedpe bed3+
1
vcf
Organism
238
Homo sapiens
Biosample type
163
tissue
42
cell line
30
in vitro differentiated cells
4
primary cell
Organ
92
heart
66
kidney
35
liver
8
embryo
6
blood vessel
6
epithelium
6
vasculature
pancreas
3
connective tissue
2
artery
1
adipose tissue
Project
239
AMP
Genome assembly (visualization)
48
hg19
31
GRCh38
Lab
139
AMP-T2D consortium
64
Katalin Susztak, Upenn
34
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
assay_title!
ATAC-seq
organ_slims!
gonad
pancreas
stomach
BIOSAMPLE
ASSAY
239 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
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cell line
HepG2
9
18
2
1
1
H1-hESC
8
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
7
21
adipocyte
1
osteoblast
1
primary cell
hepatocyte
4
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