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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
74
total RNA-seq
23
ChIP-seq
14
single cell RNA-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
88
Transcription
23
DNA binding
6
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
635
February, 2021
318
November, 2017
222
May, 2021
214
May, 2020
207
August, 2017
168
July, 2018
166
June, 2019
131
August, 2021
123
May, 2022
101
February, 2023
93
October, 2019
88
November, 2018
81
July, 2019
63
December, 2017
56
September, 2020
50
March, 2020
49
April, 2018
47
September, 2023
46
October, 2018
35
December, 2018
27
September, 2018
25
November, 2019
23
February, 2018
23
January, 2019
22
February, 2020
20
May, 2019
19
April, 2020
16
January, 2021
15
November, 2020
10
December, 2019
6
September, 2017
5
April, 2019
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
3
October, 2017
1
August, 2022
1
March, 2019
Available data
57
txt
31
tsv
26
bigWig
23
bam
11
bed narrowPeak
8
tagAlign
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
130
Homo sapiens
Biosample type
73
tissue
41
cell line
16
in vitro differentiated cells
1
primary cell
Organ
heart
66
kidney
29
liver
8
embryo
6
blood vessel
6
vasculature
4
pancreas
3
connective tissue
3
epithelium
2
artery
1
adipose tissue
Project
131
AMP
Genome assembly (visualization)
30
hg19
15
GRCh38
Lab
64
Katalin Susztak, Upenn
33
Bing Ren, UCSD
32
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_title!
ATAC-seq
organ_slims!
heart
lymph node
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
131 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
49
8
6
1
aorta
4
islet of Langerhans
1
1
pulmonary artery
2
subcutaneous adipose tissue
1
cell line
HepG2
9
15
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
7
7
adipocyte
1
osteoblast
1
primary cell
hepatocyte
1
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