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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
519
total RNA-seq
84
RNA microarray
42
ChIP-seq
27
snATAC-seq
ATAC-seq
18
single cell RNA-seq
3
snDrop-seq
2
pCHi-C
1
Hi-C
Assay category
537
Transcription
42
DNA binding
27
DNA accessibility
1
3D chromatin structure
Target of assay
33
transcription factor
7
control
2
RNA binding protein
2
chromatin remodeller
Date released
661
February, 2021
400
November, 2017
380
August, 2017
355
May, 2021
258
October, 2019
241
May, 2020
237
August, 2021
198
June, 2019
135
July, 2018
115
May, 2019
89
July, 2019
88
November, 2018
82
May, 2022
80
April, 2019
75
December, 2017
74
October, 2018
62
February, 2023
56
March, 2020
47
September, 2023
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
20
November, 2019
19
April, 2020
16
April, 2018
16
January, 2021
15
October, 2017
12
September, 2018
9
November, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
December, 2019
4
May, 2023
2
June, 2018
1
August, 2018
1
August, 2022
1
March, 2019
1
October, 2022
Available data
562
bam
554
bigWig
527
tsv
89
txt
74
fastq
35
bed narrowPeak
30
bigBed narrowPeak
8
tagAlign
6
csv
2
bed bed3+
Organism
696
Homo sapiens
Biosample type
544
tissue
89
cell line
41
primary cell
22
in vitro differentiated cells
Organ
450
connective tissue
386
adipose tissue
142
bone element
58
artery
58
blood vessel
58
heart
58
vasculature
epithelium
32
pancreas
27
blood
27
bodily fluid
8
kidney
7
spleen
3
liver
Project
657
AMP
39
HPAP
Genome assembly (visualization)
556
hg19
554
GRCh38
Lab
657
AMP-T2D consortium
39
Klaus Kaestner, Upenn
Audit category:
102
inconsistent ontology term
32
audit script error
1
inconsistent control
assay_title!
ATAC-seq
organ_slims!
epithelium
BIOSAMPLE
ASSAY
696 results
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Clear Filters
total RNA-seq
RNA microarray
ChIP-seq
snATAC-seq
single cell RNA-seq
snDrop-seq
pCHi-C
Hi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
spleen
7
kidney
5
+ See 6 more…
cell line
smooth muscle cell of the coronary artery
52
6
GM12878
27
HepG2
1
1
iPSC derived cell line
2
primary cell
Langerhans cell
27
12
osteoblast
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
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