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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
total RNA-seq
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
single cell RNA-seq
Assay category
90
Transcription
2
DNA accessibility
Date released
690
February, 2021
356
August, 2017
356
May, 2021
335
November, 2017
233
October, 2019
231
August, 2021
218
May, 2020
204
June, 2019
168
July, 2018
123
May, 2022
98
February, 2023
98
July, 2019
97
May, 2019
82
November, 2018
73
December, 2017
66
April, 2019
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
October, 2018
47
September, 2023
40
May, 2024
33
November, 2019
31
December, 2018
31
February, 2018
26
January, 2019
24
February, 2020
19
April, 2020
16
January, 2021
12
October, 2017
10
December, 2019
10
November, 2020
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
August, 2022
1
March, 2019
Available data
76
fastq
4
txt
Organism
97
Homo sapiens
Biosample type
76
primary cell
12
tissue
6
cell line
4
in vitro differentiated cells
Organ
45
pancreas
40
epithelium
4
bone element
4
connective tissue
eye
4
skeleton
1
heart
Project
76
HPAP
12
T1D
10
AMP
Lab
76
Klaus Kaestner, Upenn
12
Kyle Gaulton, UCSD
10
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_title!
ATAC-seq
organ_slims!
eye
target.investigated_as!
control
target.investigated_as!!
control
BIOSAMPLE
ASSAY
98 results
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Clear Filters
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
single cell RNA-seq
primary cell
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
tissue
islet of Langerhans
5
2
acetabular part of hip bone
1
heart
1
ilium
1
ischium
1
+ See 1 more…
cell line
EndoC_BH1
3
2
1
in vitro differentiated cells
immature adipocyte
2
adipocyte
1
preadipocyte
1
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