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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
ATAC-seq
9
DNase-seq
7
WGBS
4
single cell RNA-seq
1
FAIRE-seq
1
Hi-C
1
total RNA-seq
Assay category
70
DNA binding
10
DNA accessibility
7
DNA methylation
5
Transcription
1
3D chromatin structure
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
693
February, 2021
406
August, 2017
406
November, 2017
365
May, 2021
292
October, 2019
243
August, 2021
241
May, 2020
218
June, 2019
168
July, 2018
123
May, 2022
120
May, 2019
102
February, 2023
102
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
November, 2020
15
October, 2017
10
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
August, 2022
1
March, 2019
Available data
88
fastq
87
bam
80
bigWig
73
bed narrowPeak
73
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
bedpe
1
csv
1
hic
Organism
93
Homo sapiens
Biosample type
61
cell line
31
tissue
1
primary cell
Organ
53
liver
15
blood
15
bodily fluid
9
spleen
8
pancreas
3
kidney
2
adipose tissue
2
brain
2
connective tissue
Project
93
AMP
Genome assembly (visualization)
80
GRCh38
73
hg19
Lab
89
AMP-T2D consortium
3
Katalin Susztak, Upenn
1
Bing Ren, UCSD
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
93 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
single cell RNA-seq
FAIRE-seq
Hi-C
total RNA-seq
cell line
HepG2
45
1
GM12878
15
tissue
spleen
6
1
2
liver
4
2
body of pancreas
2
2
kidney
3
pancreas
2
1
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primary cell
pancreatic cell
1
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