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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
20
total RNA-seq
9
ChIP-seq
5
Hi-C
1
MPRA
Assay category
20
Transcription
9
DNA binding
5
3D chromatin structure
Target of assay
10
histone
10
histone modification
6
broad histone mark
narrow histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
693
February, 2021
368
November, 2017
318
August, 2017
301
May, 2021
232
August, 2021
214
May, 2020
207
June, 2019
168
July, 2018
151
October, 2019
123
May, 2022
102
February, 2023
102
July, 2019
88
November, 2018
86
May, 2019
78
December, 2017
65
October, 2018
57
April, 2019
57
March, 2020
56
September, 2020
49
April, 2018
47
September, 2023
44
September, 2018
35
December, 2018
31
February, 2018
31
November, 2019
27
January, 2019
25
February, 2020
25
May, 2024
19
April, 2020
16
January, 2021
15
November, 2020
13
October, 2017
10
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
August, 2022
1
March, 2019
Available data
29
bam
27
bigWig
20
tsv
7
bed narrowPeak
5
bedpe bed3+
5
hic
3
cool
1
txt
Organism
34
Homo sapiens
Biosample type
20
tissue
12
cell line
3
primary cell
Organ
34
pancreas
14
epithelium
Project
32
AMP
3
HPAP
Genome assembly (visualization)
32
hg19
27
GRCh38
Lab
32
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
11
inconsistent ontology term
3
audit script error
assay_title!
ATAC-seq
month_released!
August, 2018
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
35 results
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Clear Filters
total RNA-seq
ChIP-seq
Hi-C
MPRA
tissue
islet of Langerhans
19
1
cell line
EndoC_BH1
1
9
1
MIN6
1
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
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