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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 398total RNA-seq
  • 73ChIP-seq
  • ATAC-seq
  • 6WGBS
  • 3small RNA-seq
  • 2DNase-seq
  • 2pCHi-C
  • 1RNA microarray
Assay category
  • 401Transcription
  • 73DNA binding
  • 6DNA methylation
  • 2DNA accessibility
Target of assay
  • 32histone
  • 32histone modification
  • 24control
  • 20broad histone mark
  • 17transcription factor
  • 12narrow histone mark
  • 5RNA binding protein
Date released
  • 386February, 2021
  • 56August, 2017
  • 23October, 2018
  • 12July, 2019
  • 2February, 2020
  • 1August, 2018
  • 1August, 2021
  • 1June, 2019
  • 1March, 2020
  • 1May, 2023
  • 1November, 2018
Available data
  • 439bam
  • 421bigWig
  • 401tsv
  • 42fastq
  • 9bed narrowPeak
  • 8bigBed narrowPeak
  • 8tagAlign
  • 6bed bed3+
  • 3bed broadPeak
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 2bigBed broadPeak
  • 1bedpe bed3+
Organism
  • 484Homo sapiens
Biosample type
  • 482tissue
  • 2primary cell
  • 1in vitro differentiated cells
Organ
  • 794pancreas
  • 768liver
  • 659connective tissue
  • 485adipose tissue
  • 421epithelium
  • 346heart
  • 282brain
  • 279kidney
  • 190vasculature
  • 184blood vessel
  • 147bone element
  • 114limb
  • 96artery
  • 95musculature of body
  • 68blood
  • 68bodily fluid
  • 42nerve
  • 37embryo
  • 33eye
  • 24spleen
  • 22vein
  • 20lung
  • 18ureter
  • 5gonad
  • 5ovary
  • 4skeleton
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 485AMP
Genome assembly (visualization)
  • 421GRCh38
  • 420hg19
Lab
  • 485AMP-T2D consortium
Audit category:
  • 12missing controlled_by
assay_title!
  • ATAC-seq
BIOSAMPLE
ASSAY

485 results

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Clear Filters
total RNA-seq
ChIP-seq
WGBS
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue382231
subcutaneous abdominal adipose tissue363
subcutaneous adipose tissue71211
omental fat pad51112
white adipose tissue12
primary cell
mesenchymal stem cell of adipose11
in vitro differentiated cells
white fat cell1
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