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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ChIP-seq
8
snATAC-seq
ATAC-seq
1
pCHi-C
Assay category
59
DNA binding
8
DNA accessibility
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
histone
1
histone modification
1
narrow histone mark
Date released
27
December, 2018
17
January, 2019
15
November, 2018
8
January, 2021
1
March, 2020
Available data
59
bam
59
fastq
53
bed narrowPeak
53
bigBed narrowPeak
53
bigWig
1
tsv
Organism
68
Homo sapiens
Biosample type
59
cell line
8
primary cell
1
tissue
Organ
666
liver
643
pancreas
581
connective tissue
453
adipose tissue
328
epithelium
249
heart
249
kidney
147
bone element
119
vasculature
114
blood vessel
95
brain
76
artery
67
blood
67
bodily fluid
65
limb
62
musculature of body
30
eye
25
embryo
20
lung
18
nerve
18
spleen
18
ureter
7
vein
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
60
AMP
8
T1D
Genome assembly (visualization)
53
GRCh38
53
hg19
Lab
60
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
assay_title!
ATAC-seq
target.investigated_as!
histone
BIOSAMPLE
ASSAY
68 results
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Clear Filters
ChIP-seq
snATAC-seq
pCHi-C
cell line
GM12878
59
primary cell
peripheral blood mononuclear cell
8
tissue
adrenal gland
1
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