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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
87
ChIP-seq
56
total RNA-seq
ATAC-seq
8
snATAC-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
87
DNA binding
58
Transcription
12
DNA accessibility
Target of assay
56
transcription factor
21
histone
21
histone modification
15
control
14
broad histone mark
11
RNA binding protein
10
chromatin remodeller
narrow histone mark
Date released
58
February, 2021
27
December, 2018
21
October, 2019
17
January, 2019
15
November, 2018
8
January, 2021
3
May, 2019
2
August, 2021
2
February, 2020
2
July, 2019
2
June, 2019
Available data
145
bam
130
bigWig
76
bed narrowPeak
72
bigBed narrowPeak
59
fastq
58
tsv
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
157
Homo sapiens
Biosample type
117
cell line
30
tissue
10
primary cell
Organ
721
pancreas
708
liver
626
connective tissue
473
adipose tissue
372
epithelium
306
heart
264
kidney
165
brain
164
vasculature
159
blood vessel
147
bone element
99
limb
90
artery
82
musculature of body
67
blood
67
bodily fluid
34
nerve
30
eye
29
embryo
22
spleen
20
lung
18
ureter
16
vein
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
149
AMP
8
T1D
Genome assembly (visualization)
130
GRCh38
130
hg19
Lab
149
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
assay_title!
ATAC-seq
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
157 results
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ChIP-seq
total RNA-seq
snATAC-seq
DNase-seq
single cell RNA-seq
cell line
GM12878
59
smooth muscle cell of the coronary artery
6
52
tissue
tibial artery
19
1
2
coronary artery
3
1
2
pulmonary artery
2
primary cell
peripheral blood mononuclear cell
8
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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