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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
118
total RNA-seq
84
RNA microarray
ATAC-seq
34
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
1
pCHi-C
Assay category
120
Transcription
34
DNA binding
4
DNA accessibility
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
200
February, 2021
25
October, 2019
5
May, 2019
4
February, 2023
2
August, 2021
2
February, 2020
2
July, 2019
2
June, 2019
1
May, 2021
Available data
150
bam
141
bigWig
116
tsv
88
txt
29
bed narrowPeak
25
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
243
Homo sapiens
Biosample type
182
tissue
58
cell line
3
primary cell
Organ
pancreas
768
liver
659
connective tissue
485
adipose tissue
421
epithelium
346
heart
282
brain
279
kidney
190
vasculature
184
blood vessel
147
bone element
114
limb
96
artery
95
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
242
AMP
1
T1D
Genome assembly (visualization)
141
GRCh38
141
hg19
Lab
242
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
assay_title!
ATAC-seq
organ_slims!
pancreas
BIOSAMPLE
ASSAY
243 results
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total RNA-seq
RNA microarray
ChIP-seq
DNase-seq
single cell RNA-seq
pCHi-C
tissue
bone element
84
bone tissue
58
tibial artery
1
23
2
coronary artery
1
5
2
pulmonary artery
2
+ See 4 more…
cell line
smooth muscle cell of the coronary artery
52
6
primary cell
endothelial cell of coronary artery
1
megakaryocyte
1
smooth muscle cell of the coronary artery
1
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