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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
62
total RNA-seq
60
ChIP-seq
ATAC-seq
8
snATAC-seq
2
pCHi-C
Assay category
62
Transcription
60
DNA binding
8
DNA accessibility
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
1
histone
1
histone modification
1
narrow histone mark
Date released
142
February, 2021
27
December, 2018
18
January, 2019
15
November, 2018
8
January, 2021
4
February, 2023
1
March, 2020
1
May, 2021
Available data
118
bam
112
bigWig
88
txt
60
fastq
59
tsv
54
bed narrowPeak
54
bigBed narrowPeak
Organism
216
Homo sapiens
Biosample type
147
tissue
60
cell line
9
primary cell
Organ
794
pancreas
766
liver
659
connective tissue
485
adipose tissue
421
epithelium
346
heart
282
brain
279
kidney
190
vasculature
184
blood vessel
147
bone element
114
limb
96
artery
95
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
22
vein
21
spleen
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
207
AMP
9
T1D
Genome assembly (visualization)
112
GRCh38
112
hg19
Lab
207
AMP-T2D consortium
9
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
1
inconsistent control
assay_title!
ATAC-seq
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
216 results
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RNA microarray
total RNA-seq
ChIP-seq
snATAC-seq
pCHi-C
tissue
bone element
84
bone tissue
58
acetabular part of hip bone
1
esophagus
1
ilium
1
+ See 2 more…
cell line
GM12878
60
primary cell
peripheral blood mononuclear cell
8
megakaryocyte
1
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