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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ChIP-seq
18
snATAC-seq
9
single cell RNA-seq
2
pCHi-C
ATAC-seq
Assay category
64
DNA binding
18
DNA accessibility
9
Transcription
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
5
histone
5
histone modification
5
narrow histone mark
Date released
27
December, 2018
19
April, 2020
18
January, 2019
15
November, 2018
8
January, 2021
4
October, 2019
2
March, 2020
Available data
60
bam
60
fastq
54
bed narrowPeak
54
bigBed narrowPeak
54
bigWig
2
tsv
Organism
92
Homo sapiens
Biosample type
60
cell line
25
tissue
8
primary cell
Organ
794
pancreas
768
liver
659
connective tissue
485
adipose tissue
epithelium
346
heart
282
brain
279
kidney
190
vasculature
184
blood vessel
147
bone element
114
limb
96
artery
95
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
66
AMP
19
LungMap
8
T1D
Genome assembly (visualization)
54
GRCh38
54
hg19
Lab
66
AMP-T2D consortium
19
Xin Sun, UCSD
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
assay_title!
ATAC-seq
organ_slims!
epithelium
BIOSAMPLE
ASSAY
93 results
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Clear Filters
ChIP-seq
snATAC-seq
single cell RNA-seq
pCHi-C
cell line
GM12878
60
tissue
lung
10
9
1
islet of Langerhans
4
ovary
1
primary cell
peripheral blood mononuclear cell
8
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