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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
31
ChIP-seq
17
total RNA-seq
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
33
DNA accessibility
31
DNA binding
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
histone modification
117
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
30
June, 2019
18
November, 2017
17
July, 2019
12
February, 2020
8
October, 2019
3
May, 2019
3
October, 2017
2
March, 2020
2
November, 2018
Available data
75
bam
54
bigWig
36
bed narrowPeak
36
bigBed narrowPeak
35
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
26
tsv
19
tagAlign
10
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
Organism
95
Homo sapiens
Biosample type
77
tissue
18
primary cell
Organ
665
liver
643
pancreas
581
connective tissue
453
adipose tissue
328
epithelium
249
heart
249
kidney
147
bone element
119
vasculature
114
blood vessel
95
brain
76
artery
67
blood
67
bodily fluid
65
limb
62
musculature of body
30
eye
25
embryo
20
lung
18
nerve
18
spleen
18
ureter
7
vein
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
stomach
1
urinary bladder
Project
95
AMP
Genome assembly (visualization)
47
GRCh38
46
hg19
Lab
95
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
ATAC-seq
organ_slims!
stomach
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
95 results
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DNase-seq
ChIP-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
14
3
1
1
frontal cortex
2
2
1
1
cerebellum (Hemisphere)
1
2
1
1
caudate nucleus
1
2
1
temporal lobe
2
1
1
+ See 27 more…
primary cell
astrocyte of the cerebellum
1
2
1
brain microvascular endothelial cell
1
2
1
choroid plexus epithelial cell
1
2
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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