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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 474total RNA-seq
  • 153ChIP-seq
  • ATAC-seq
  • 9DNase-seq
  • 6WGBS
  • 5pCHi-C
  • 4single cell RNA-seq
  • 3small RNA-seq
  • 2Capture-C
  • 1Hi-C
  • 1RNA microarray
  • 1RRBS
Assay category
  • 481Transcription
  • 153DNA binding
  • 9DNA accessibility
  • 7DNA methylation
  • 13D chromatin structure
Target of assay
  • 78histone
  • 78histone modification
  • 44broad histone mark
  • 40transcription factor
  • 35control
  • 33narrow histone mark
  • 10RNA binding protein
  • 2chromatin remodeller
Date released
  • 450February, 2021
  • 124August, 2017
  • 23October, 2018
  • 18July, 2019
  • 18June, 2019
  • 5November, 2020
  • 4February, 2023
  • 3August, 2021
  • 2April, 2018
  • 2February, 2020
  • 2July, 2018
  • 2March, 2020
  • 2May, 2021
  • 1August, 2018
  • 1May, 2023
  • 1November, 2018
  • 1October, 2019
Available data
  • 588bam
  • 561bigWig
  • 478tsv
  • 99fastq
  • 67bed narrowPeak
  • 24bigBed narrowPeak
  • 23bed bed3+
  • 22tagAlign
  • 10bed broadPeak
  • 9bigBed broadPeak
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 1bedpe bed3+
  • 1hdf5
Organism
  • 658Homo sapiens
Biosample type
  • 541tissue
  • 80in vitro differentiated cells
  • 37primary cell
  • 1stem cell
Organ
  • 794pancreas
  • 768liver
  • 659connective tissue
  • 485adipose tissue
  • 421epithelium
  • 346heart
  • 282brain
  • 279kidney
  • 190vasculature
  • 184blood vessel
  • 147bone element
  • 114limb
  • 96artery
  • 95musculature of body
  • 68blood
  • 68bodily fluid
  • 42nerve
  • 37embryo
  • 33eye
  • 24spleen
  • 22vein
  • 20lung
  • 18ureter
  • 5gonad
  • 5ovary
  • 4skeleton
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 658AMP
  • 1T1D
Genome assembly (visualization)
  • 564hg19
  • 561GRCh38
Lab
  • 656AMP-T2D consortium
  • 2Struan F.A. Grant, CHOP
  • 1Kyle Gaulton, UCSD
Audit category:
  • 16inconsistent ontology term
Audit category:
  • 17missing controlled_by
Audit category:
  • 6inconsistent control read length
assay_title!
  • ATAC-seq
BIOSAMPLE
ASSAY

659 results

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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
Capture-C
Hi-C
RNA microarray
RRBS
tissue
adipose tissue382231
bone tissue58
subcutaneous abdominal adipose tissue363
subcutaneous adipose tissue71211
omental fat pad51121
in vitro differentiated cells
adipocyte56711
immature adipocyte2
cardiac fibroblast1
osteoblast1
preadipocyte1
primary cell
cardiac fibroblast531
mesenchymal stem cell7
osteoblast511
pancreatic stellate cell4
brain pericyte11
stem cell
mesenchymal stem cell1
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