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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 66ChIP-seq
  • 36DNase-seq
  • ATAC-seq
  • 7total RNA-seq
  • 4Hi-C
  • 1WGBS
Assay category
  • 66DNA binding
  • 36DNA accessibility
  • 7Transcription
  • 43D chromatin structure
  • 1DNA methylation
Target of assay
  • 49histone
  • 49histone modification
  • 34broad histone mark
  • 17control
  • 15narrow histone mark
Date released
  • 67October, 2019
  • 32June, 2019
  • 7May, 2019
  • 5July, 2019
  • 3February, 2020
Available data
  • 106bam
  • 89bigWig
  • 84bed narrowPeak
  • 84bigBed narrowPeak
  • 36bed bed3+
  • 36bed broadPeak
  • 36bigBed broadPeak
  • 7tsv
  • 1bed bedMethyl
  • 1bigBed bedMethyl
Organism
  • 114Homo sapiens
Biosample type
  • 114tissue
Organ
  • 794pancreas
  • 768liver
  • 659connective tissue
  • 485adipose tissue
  • 421epithelium
  • 346heart
  • 282brain
  • 279kidney
  • 190vasculature
  • 184blood vessel
  • 147bone element
  • 114limb
  • 96artery
  • 95musculature of body
  • 68blood
  • 68bodily fluid
  • 42nerve
  • 37embryo
  • 33eye
  • 24spleen
  • 22vein
  • 20lung
  • 18ureter
  • 5gonad
  • 5ovary
  • 4skeleton
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 114AMP
Genome assembly (visualization)
  • 88GRCh38
  • 88hg19
Lab
  • 114AMP-T2D consortium
Audit category:
  • 1inconsistent ontology term
assay_title!
  • ATAC-seq
BIOSAMPLE
ASSAY

114 results

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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve3525
tibial artery2321
muscle of leg7131
muscle of arm17
gastrocnemius medialis14
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