Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
450
ChIP-seq
189
total RNA-seq
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
450
DNA binding
193
Transcription
7
DNA methylation
6
DNA accessibility
4
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
108
control
103
histone modification
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
300
November, 2017
167
May, 2020
53
November, 2018
46
December, 2017
29
August, 2021
21
August, 2017
20
May, 2022
10
July, 2019
5
December, 2019
5
January, 2019
3
March, 2020
2
February, 2021
2
June, 2019
1
December, 2018
1
February, 2020
1
October, 2019
Available data
599
bam
519
bigWig
420
fastq
338
bed narrowPeak
322
bigBed narrowPeak
174
tsv
49
bed broadPeak
49
bigBed broadPeak
28
tagAlign
10
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
csv
1
hdf5
1
vcf
Organism
666
Homo sapiens
Biosample type
382
cell line
271
tissue
10
primary cell
3
in vitro differentiated cells
Organ
666
liver
643
pancreas
581
connective tissue
453
adipose tissue
328
epithelium
249
heart
249
kidney
147
bone element
119
vasculature
114
blood vessel
95
brain
76
artery
blood
67
bodily fluid
65
limb
62
musculature of body
30
eye
25
embryo
20
lung
18
nerve
18
spleen
18
ureter
7
vein
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
666
AMP
Genome assembly (visualization)
520
hg19
459
GRCh38
Lab
618
AMP-T2D consortium
28
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
assay_title!
ATAC-seq
organ_slims!
blood
target.investigated_as!
histone
BIOSAMPLE
ASSAY
666 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
360
14
1
2
2
2
1
tissue
liver
81
167
2
3
1
1
1
1
1
right lobe of liver
5
3
2
1
2
primary cell
hepatocyte
1
5
1
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
3
Download