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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
446
ChIP-seq
184
total RNA-seq
ATAC-seq
5
DNase-seq
5
WGBS
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
446
DNA binding
188
Transcription
6
DNA methylation
5
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
336
transcription factor
106
control
88
histone modification
histone
82
recombinant protein
56
RNA binding protein
53
narrow histone mark
34
broad histone mark
22
chromatin remodeller
2
other context
2
other post-translational modification
Date released
300
November, 2017
167
May, 2020
53
November, 2018
43
December, 2017
28
August, 2021
21
August, 2017
20
May, 2022
8
July, 2019
5
January, 2019
3
March, 2020
2
February, 2021
1
December, 2018
1
February, 2020
1
June, 2019
1
October, 2019
Available data
589
bam
510
bigWig
417
fastq
335
bed narrowPeak
319
bigBed narrowPeak
169
tsv
48
bed broadPeak
48
bigBed broadPeak
27
tagAlign
8
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
csv
1
vcf
Organism
654
Homo sapiens
Biosample type
382
cell line
271
tissue
1
primary cell
Organ
666
liver
643
pancreas
581
connective tissue
453
adipose tissue
epithelium
249
heart
249
kidney
147
bone element
119
vasculature
114
blood vessel
95
brain
76
artery
67
blood
67
bodily fluid
65
limb
62
musculature of body
30
eye
25
embryo
20
lung
18
nerve
18
spleen
18
ureter
7
vein
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
654
AMP
Genome assembly (visualization)
510
hg19
451
GRCh38
Lab
606
AMP-T2D consortium
28
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
assay_title!
ATAC-seq
organ_slims!
epithelium
ovary
target.investigated_as!
histone
BIOSAMPLE
ASSAY
654 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
360
14
1
2
2
2
1
tissue
liver
81
167
2
3
1
1
1
1
1
right lobe of liver
5
3
2
1
2
primary cell
hepatic stellate cell
1
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