Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 39ChIP-seq
  • 33DNase-seq
  • 6Hi-C
  • 6total RNA-seq
  • 5RRBS
  • 2small RNA-seq
  • ATAC-seq
  • 1WGBS
  • 1pCHi-C
  • 1single cell RNA-seq
  • 1snATAC-seq
Assay category
  • 39DNA binding
  • 34DNA accessibility
  • 9Transcription
  • 63D chromatin structure
  • 6DNA methylation
Target of assay
  • 33histone
  • 33histone modification
  • 20broad histone mark
  • 13narrow histone mark
  • 6control
Date released
  • 43June, 2019
  • 26August, 2017
  • 10July, 2019
  • 7May, 2019
  • 5March, 2020
  • 2February, 2020
  • 2May, 2022
Available data
  • 67bigWig
  • 60bed narrowPeak
  • 57bam
  • 47bigBed narrowPeak
  • 46bed broadPeak
  • 34bed bed3+
  • 33bigBed broadPeak
  • 15tagAlign
  • 9tsv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 2bedpe bed3+
  • 2fastq
  • 2hic
  • 1txt
Organism
  • 95Homo sapiens
Biosample type
  • 81tissue
  • 14primary cell
Organ
  • 794pancreas
  • 768liver
  • 659connective tissue
  • 485adipose tissue
  • 421epithelium
  • 346heart
  • 282brain
  • 279kidney
  • 190vasculature
  • 184blood vessel
  • 147bone element
  • 114limb
  • 96artery
  • 95musculature of body
  • 68blood
  • 68bodily fluid
  • 42nerve
  • 37embryo
  • 33eye
  • 24spleen
  • 22vein
  • 20lung
  • 18ureter
  • 5gonad
  • 5ovary
  • 4skeleton
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 95AMP
Genome assembly (visualization)
  • 72hg19
  • 53GRCh38
Lab
  • 95AMP-T2D consortium
Audit category:
  • 9inconsistent ontology term
  • 1audit script error
assay_title!
  • ATAC-seq
BIOSAMPLE
ASSAY

95 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
DNase-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue2214111
muscle of leg7131
muscle of arm17
gastrocnemius medialis41
psoas muscle221
primary cell
skeletal muscle satellite cell811
skeletal muscle cell211
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego