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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 397total RNA-seq
  • 218ChIP-seq
  • ATAC-seq
  • 80single cell RNA-seq
  • 51WGBS
  • 11snATAC-seq
  • 10MeRIP-seq
  • 9Hi-C
  • 8DNase-seq
  • 2Capture-C
  • 2FAIRE-seq
  • 2RRBS
  • 2small RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1pCHi-C
Assay category
  • 479Transcription
  • 218DNA binding
  • 53DNA methylation
  • 21DNA accessibility
  • 93D chromatin structure
Target of assay
  • 151histone
  • 151histone modification
  • 78broad histone mark
  • 73narrow histone mark
  • 53control
  • 19transcription factor
  • 9RNA binding protein
  • 5nucleotide modification
Date released
  • 185August, 2017
  • 157July, 2018
  • 58September, 2018
  • 53October, 2018
  • 47May, 2022
  • 45February, 2023
  • 45May, 2021
  • 39April, 2018
  • 35November, 2019
  • 32February, 2021
  • 16September, 2020
  • 15October, 2019
  • 10March, 2020
  • 10November, 2020
  • 8January, 2021
  • 7November, 2018
  • 6July, 2019
  • 6September, 2017
  • 4August, 2021
  • 4June, 2019
  • 3August, 2018
  • 3October, 2022
  • 2May, 2019
  • 1August, 2022
  • 1February, 2020
  • 1June, 2018
  • 1March, 2019
Available data
  • 624bam
  • 582bigWig
  • 415fastq
  • 415tsv
  • 150bed narrowPeak
  • 69bigBed narrowPeak
  • 41zippedFastqFolder
  • 29bed bed3+
  • 19bed broadPeak
  • 19tagAlign
  • 7bedpe bed3+
  • 7bigBed broadPeak
  • 7hic
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 6txt
  • 3cool
  • 1bedpe
  • 1hdf5
Organism
  • 786Homo sapiens
Biosample type
  • 443tissue
  • 275primary cell
  • 73cell line
  • 3in vitro differentiated cells
Organ
  • 794pancreas
  • 768liver
  • 659connective tissue
  • 485adipose tissue
  • 421epithelium
  • 346heart
  • 282brain
  • 279kidney
  • 190vasculature
  • 184blood vessel
  • 147bone element
  • 114limb
  • 96artery
  • 95musculature of body
  • 68blood
  • 68bodily fluid
  • 42nerve
  • 37embryo
  • 33eye
  • 24spleen
  • 22vein
  • 20lung
  • 18ureter
  • 5gonad
  • 5ovary
  • 4skeleton
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 668AMP
  • 103HPAP
  • 23T1D
Genome assembly (visualization)
  • 587hg19
  • 576GRCh38
Lab
  • 656AMP-T2D consortium
  • 103Klaus Kaestner, Upenn
  • 22Kyle Gaulton, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 3Bing Ren, UCSD
Audit category:
  • 62inconsistent ontology term
  • 4audit script error
Audit category:
  • 54missing controlled_by
Audit category:
  • 9inconsistent control read length
  • 2inconsistent assembly
assay_title!
  • ATAC-seq
BIOSAMPLE
ASSAY

794 results

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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
WGBS
snATAC-seq
MeRIP-seq
Hi-C
DNase-seq
Capture-C
FAIRE-seq
RRBS
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
tissue
islet of Langerhans278506743111
body of pancreas335242
pancreas2162412111
endocrine pancreas16
primary cell
pancreatic alpha cell521312311
pancreatic beta cell211312161
pancreatic ductal cell41310
pancreatic acinar cell48121
pancreatic endocrine cell23
cell line
EndoC_BH133156121
Panc11311
in vitro differentiated cells
pancreatic PP cell3
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