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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
2
WGBS
ATAC-seq
1
DNase-seq
1
pCHi-C
Assay category
14
DNA binding
2
DNA methylation
1
DNA accessibility
Target of assay
8
control
6
histone
histone modification
6
transcription factor
4
broad histone mark
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
9
November, 2018
7
December, 2018
1
January, 2019
1
March, 2020
Available data
17
bam
17
fastq
9
bigWig
7
bed narrowPeak
7
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
tsv
Organism
18
Homo sapiens
Biosample type
18
tissue
Organ
665
liver
643
pancreas
581
connective tissue
453
adipose tissue
328
epithelium
249
heart
249
kidney
147
bone element
119
vasculature
114
blood vessel
95
brain
76
artery
67
blood
67
bodily fluid
65
limb
62
musculature of body
30
eye
25
embryo
20
lung
18
nerve
18
spleen
18
ureter
7
vein
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
18
AMP
Genome assembly (visualization)
9
GRCh38
7
hg19
Lab
18
AMP-T2D consortium
assay_title!
ATAC-seq
organ_slims!
esophagus
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
18 results
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ChIP-seq
WGBS
DNase-seq
pCHi-C
tissue
spleen
14
2
1
1
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