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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
3
DNase-seq
2
Hi-C
2
WGBS
ATAC-seq
1
FAIRE-seq
1
pCHi-C
Assay category
37
DNA binding
4
DNA accessibility
2
3D chromatin structure
2
DNA methylation
Target of assay
21
histone
21
histone modification
13
broad histone mark
10
control
8
narrow histone mark
6
transcription factor
3
other context
3
other post-translational modification
Date released
21
October, 2019
9
November, 2018
7
December, 2018
7
January, 2019
2
March, 2020
Available data
43
bam
30
bigWig
26
bed narrowPeak
26
bigBed narrowPeak
23
fastq
5
bed broadPeak
5
bigBed broadPeak
3
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
2
hic
1
bedpe bed3+
1
tar
1
tsv
Organism
46
Homo sapiens
Biosample type
24
tissue
22
primary cell
Organ
794
pancreas
768
liver
659
connective tissue
485
adipose tissue
421
epithelium
346
heart
282
brain
279
kidney
190
vasculature
184
blood vessel
147
bone element
114
limb
96
artery
95
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
46
AMP
Genome assembly (visualization)
30
hg19
27
GRCh38
Lab
46
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
ATAC-seq
organ_slims!
intestine
BIOSAMPLE
ASSAY
46 results
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ChIP-seq
DNase-seq
Hi-C
WGBS
FAIRE-seq
pCHi-C
tissue
spleen
20
1
2
1
primary cell
endothelial cell of umbilical vein
17
2
2
1
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