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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1864ChIP-seq
  • ATAC-seq
  • 212DNase-seq
  • 83snATAC-seq
  • 75WGBS
  • 68total RNA-seq
  • 57pCHi-C
  • 34Hi-C
  • 21RRBS
  • 5FAIRE-seq
  • 5GRO-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3single cell RNA-seq
  • 2HiChIP
  • 1DNAme array
  • 1whole genome sequencing assay
Assay category
  • 1864DNA binding
  • 300DNA accessibility
  • 97DNA methylation
  • 71Transcription
  • 343D chromatin structure
  • 1DNA sequencing
Target of assay
  • 1011histone modification
  • 1010histone
  • 514transcription factor
  • 512narrow histone mark
  • 497broad histone mark
  • 337control
  • 114RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 406November, 2017
  • 310August, 2017
  • 266October, 2019
  • 218June, 2019
  • 183May, 2021
  • 120May, 2019
  • 96May, 2020
  • 94December, 2017
  • 87November, 2018
  • 80April, 2019
  • 74October, 2018
  • 63May, 2022
  • 57August, 2021
  • 53July, 2019
  • 45March, 2020
  • 44February, 2021
  • 40May, 2024
  • 35December, 2018
  • 32September, 2018
  • 30January, 2019
  • 24February, 2018
  • 16January, 2021
  • 15November, 2019
  • 15October, 2017
  • 9April, 2020
  • 7February, 2023
  • 6September, 2017
  • 5January, 2018
  • 3October, 2022
  • 1August, 2018
  • 1August, 2022
  • 1March, 2019
  • 1March, 2023
  • 1November, 2020
Available data
  • 1875bam
  • 1696bigWig
  • 1533bed narrowPeak
  • 1009bigBed narrowPeak
  • 924fastq
  • 391tagAlign
  • 314bed broadPeak
  • 285bigBed broadPeak
  • 267bed bed3+
  • 108tsv
  • 62zippedFastqFolder
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1txt
  • 1vcf
Organism
  • 2438Homo sapiens
Biosample type
  • 1192tissue
  • 514primary cell
  • 510cell line
  • 214in vitro differentiated cells
  • 8stem cell
Organ
  • 578liver
  • 297pancreas
  • 261brain
  • 217epithelium
  • 184heart
  • 183connective tissue
  • 151kidney
  • 125vasculature
  • 119blood vessel
  • 111limb
  • 87musculature of body
  • 84adipose tissue
  • 68blood
  • 68bodily fluid
  • 41nerve
  • 40artery
  • 24spleen
  • 23embryo
  • 22vein
  • 18ureter
  • 14eye
  • 10lung
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone element
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pituitary gland
  • 1small intestine
  • 1stomach
  • 1urinary bladder
Project
  • 2157AMP
  • 173T1D
  • 98HPAP
  • 9LungMap
  • 1ITG
Genome assembly (visualization)
  • 1614hg19
  • 1557GRCh38
  • 5hg18
Lab
  • 2020AMP-T2D consortium
  • 239Kyle Gaulton, UCSD
  • 98Klaus Kaestner, Upenn
  • 40Patrick T. Ellinor, Broad
  • 22Bing Ren, UCSD
  • 9Xin Sun, UCSD
  • 7Katalin Susztak, Upenn
  • 2Struan F.A. Grant, CHOP
  • 1ITG
Audit category:
  • 85inconsistent ontology term
  • 33audit script error
  • 28inconsistent control
Audit category:
  • 89missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
assay_title!
  • ATAC-seq
BIOSAMPLE
ASSAY

2438 results

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Clear Filters
ChIP-seq
DNase-seq
snATAC-seq
WGBS
total RNA-seq
pCHi-C
Hi-C
RRBS
FAIRE-seq
GRO-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
single cell RNA-seq
HiChIP
DNAme array
whole genome sequencing assay
tissue
liver14523111
islet of Langerhans71174311
kidney27136111
heart left ventricle3534111
body of pancreas3542
primary cell
monocyte85211
Langerhans cell48
pancreatic alpha cell13311
CD8-positive, alpha-beta T cell3321
pancreatic beta cell13161
cell line
HepG237815221
GM1287860
EndoC_BH1151232
Panc11311
smooth muscle cell of the coronary artery6
in vitro differentiated cells
adipocyte6711
embryonic stem cell401
neural progenitor cell21
pancreatic endoderm181
hepatocyte15
stem cell
hESC31
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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