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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 190total RNA-seq
  • 181ChIP-seq
  • ATAC-seq
  • 89single cell RNA-seq
  • 28pCHi-C
  • 27DNase-seq
  • 11small RNA-seq
  • 9Hi-C
  • 5snATAC-seq
  • 4MeRIP-seq
  • 3FAIRE-seq
  • 2Capture-C
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 290Transcription
  • 181DNA binding
  • 35DNA accessibility
  • 93D chromatin structure
  • 1DNA methylation
Target of assay
  • 133histone
  • 133histone modification
  • 90narrow histone mark
  • 43broad histone mark
  • 33transcription factor
  • 17control
  • 9RNA binding protein
  • 2nucleotide modification
Date released
  • 130May, 2021
  • 47October, 2019
  • 44July, 2018
  • 43May, 2020
  • 39April, 2018
  • 36August, 2021
  • 36July, 2019
  • 33August, 2017
  • 30June, 2019
  • 30March, 2020
  • 25February, 2020
  • 15February, 2023
  • 10February, 2021
  • 6October, 2017
  • 4November, 2020
  • 3August, 2018
  • 3December, 2017
  • 3October, 2022
  • 2January, 2021
  • 2May, 2022
  • 2November, 2018
  • 2September, 2017
  • 1April, 2019
  • 1February, 2018
  • 1June, 2018
  • 1March, 2019
  • 1March, 2023
  • 1October, 2018
  • 1September, 2018
Available data
  • 425bam
  • 409bigWig
  • 289tsv
  • 158bed narrowPeak
  • 127fastq
  • 116tagAlign
  • 65bed bed3+
  • 37bigBed narrowPeak
  • 24bed broadPeak
  • 24bigBed broadPeak
  • 8hic
  • 7bedpe bed3+
  • 5txt
  • 3cool
  • 2csv
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 552Homo sapiens
Biosample type
  • 244primary cell
  • 216tissue
  • 91in vitro differentiated cells
  • 1stem cell
Organ
  • 120pancreas
  • 81epithelium
  • 70brain
  • 46connective tissue
  • 25heart
  • 19kidney
  • 16liver
  • 14adipose tissue
  • 9musculature of body
  • 7blood vessel
  • 7vasculature
  • 4artery
  • 4bone element
  • 4skeleton
  • 3eye
  • 3limb
  • 2blood
  • 2bodily fluid
  • 2embryo
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1nerve
  • 1ovary
  • 1pericardium
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
  • 1vein
Project
  • 421AMP
  • 127T1D
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 414hg19
  • 412GRCh38
Lab
  • 400AMP-T2D consortium
  • 139Kyle Gaulton, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 3Bing Ren, UCSD
  • 3Klaus Kaestner, Upenn
  • 2Struan F.A. Grant, CHOP
  • 1ITG
Audit category:
  • 39inconsistent ontology term
  • 4audit script error
Audit category:
  • 14missing controlled_by
Audit category:
  • 4inconsistent control read length
assay_title!
  • ATAC-seq
BIOSAMPLE
ASSAY

552 results

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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
pCHi-C
DNase-seq
small RNA-seq
Hi-C
snATAC-seq
MeRIP-seq
FAIRE-seq
Capture-C
snDrop-seq
DNAme array
primary cell
monocyte26471
pancreatic alpha cell111
pancreatic beta cell111
pancreatic delta cell10
pancreatic acinar cell81
tissue
islet of Langerhans102261224
liver26111
heart21411
brain62
frontal cortex2211
in vitro differentiated cells
neural progenitor cell721
embryonic stem cell5111
cardiomyocytes12
adipocyte171
induced pluripotent stem cell9
stem cell
mesenchymal stem cell1
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