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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
55
total RNA-seq
19
RRBS
17
WGBS
13
single cell RNA-seq
1
MPRA
1
snATAC-seq
Assay category
68
Transcription
36
DNA methylation
1
DNA accessibility
Date released
89
February, 2021
57
August, 2021
23
July, 2019
February, 2023
7
May, 2022
7
November, 2018
6
August, 2017
1
October, 2022
Available data
3392
bam
3166
bigWig
1752
bed narrowPeak
1584
tsv
1282
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
269
bed bed3+
154
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
8
csv
5
hdf5
4
bed bedgraph
4
tar
3
cool
2
bed bed3
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
189
Homo sapiens
Biosample type
178
tissue
10
primary cell
2
cell line
Organ
84
bone element
66
kidney
12
pancreas
8
heart
6
epithelium
5
musculature of body
3
connective tissue
3
liver
2
adipose tissue
2
brain
2
spleen
2
vasculature
1
blood vessel
1
eye
1
limb
1
pericardium
Project
190
AMP
Genome assembly (visualization)
20
hg19
17
GRCh38
Lab
127
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
Audit category:
86
inconsistent ontology term
6
audit script error
assay_title!
CRISPR RNA-seq
assay_title!!
CRISPR RNA-seq
month_released!
February, 2023
BIOSAMPLE
ASSAY
190 results
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Clear Filters
RNA microarray
total RNA-seq
RRBS
WGBS
single cell RNA-seq
MPRA
snATAC-seq
tissue
bone element
84
kidney
49
1
13
islet of Langerhans
6
1
heart left ventricle
1
2
pancreas
1
2
+ See 12 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 5 more…
cell line
HepG2
1
MIN6
1
See all biosamples
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