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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
DNase-seq
13
total RNA-seq
3
ATAC-seq
2
pCHi-C
Assay category
218
DNA binding
13
Transcription
3
DNA accessibility
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
86
October, 2019
28
May, 2019
July, 2019
16
October, 2017
12
February, 2020
2
March, 2020
1
February, 2023
Available data
198
bam
174
bigWig
170
bed narrowPeak
118
tagAlign
94
bigBed narrowPeak
19
fastq
15
bed broadPeak
15
tsv
6
bigBed broadPeak
1
bed bed3
1
tagAlign bed3+
Organism
236
Homo sapiens
Biosample type
227
tissue
9
primary cell
Organ
841
pancreas
657
connective tissue
477
adipose tissue
414
epithelium
374
liver
272
heart
244
kidney
236
brain
159
bone element
147
vasculature
144
blood vessel
81
limb
68
artery
56
eye
53
musculature of body
41
nerve
29
embryo
24
spleen
lung
20
vein
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
236
AMP
Genome assembly (visualization)
173
GRCh38
125
hg19
Lab
236
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
CRISPR RNA-seq
DNase-seq
biosample_type!
cell line
month_released!
July, 2019
organ_slims!
lung
BIOSAMPLE
ASSAY
236 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
tissue
layer of hippocampus
23
brain
20
1
1
substantia nigra
16
1
caudate nucleus
15
1
angular gyrus
15
+ See 70 more…
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
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