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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
214
ChIP-seq
189
total RNA-seq
22
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
214
DNA binding
193
Transcription
28
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
193
May, 2020
74
November, 2017
50
August, 2017
40
May, 2022
30
December, 2017
24
August, 2021
10
July, 2019
6
October, 2019
5
December, 2019
5
January, 2019
4
November, 2018
2
February, 2021
2
June, 2019
2
March, 2020
1
December, 2018
1
February, 2020
Available data
354
bam
289
bigWig
172
tsv
138
fastq
111
bed narrowPeak
86
tagAlign
44
bigBed narrowPeak
19
bed broadPeak
19
bigBed broadPeak
10
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
449
Homo sapiens
Biosample type
321
tissue
102
cell line
13
in vitro differentiated cells
13
primary cell
Organ
846
pancreas
622
connective tissue
471
adipose tissue
449
liver
427
epithelium
368
heart
330
kidney
278
brain
225
vasculature
221
blood vessel
136
artery
121
limb
86
musculature of body
74
bone element
56
eye
43
nerve
28
embryo
22
vein
19
lung
18
blood
18
bodily fluid
18
spleen
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
449
AMP
Genome assembly (visualization)
294
hg19
244
GRCh38
Lab
389
AMP-T2D consortium
40
Karen Mohlke, UNC
20
Bing Ren, UCSD
Audit category:
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
Audit category:
12
inconsistent control read length
assay_title!
CRISPR RNA-seq
pCHi-C
audit.ERROR.category!
inconsistent ontology term
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
449 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
108
167
20
2
3
1
1
1
1
right lobe of liver
8
3
1
2
1
2
cell line
HepG2
81
14
1
1
2
2
1
in vitro differentiated cells
hepatocyte
13
primary cell
hepatocyte
4
5
1
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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