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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
ChIP-seq
10
ATAC-seq
4
WGBS
pCHi-C
3
total RNA-seq
2
Capture-C
1
Hi-C
1
RNA microarray
1
RRBS
Assay category
51
DNA binding
10
DNA accessibility
5
DNA methylation
3
Transcription
1
3D chromatin structure
Target of assay
44
histone
44
histone modification
28
broad histone mark
16
narrow histone mark
7
control
Date released
54
August, 2017
February, 2023
5
August, 2021
4
February, 2021
4
October, 2019
2
February, 2020
2
July, 2019
1
January, 2018
1
May, 2023
Available data
bam
570
bigWig
476
tsv
100
fastq
74
bed narrowPeak
28
bigBed narrowPeak
22
bed bed3+
22
tagAlign
10
bed broadPeak
9
bigBed broadPeak
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bed bed3
1
hdf5
Organism
72
Homo sapiens
Biosample type
47
tissue
24
in vitro differentiated cells
2
primary cell
Organ
208
kidney
200
pancreas
155
epithelium
143
heart
107
liver
84
bone element
73
connective tissue
46
adipose tissue
40
brain
38
musculature of body
19
eye
19
lung
15
vasculature
14
blood vessel
9
blood
9
bodily fluid
8
limb
4
artery
4
gonad
4
ovary
2
vein
1
embryo
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
spinal cord
Project
73
AMP
Genome assembly (visualization)
16
hg19
1
GRCh38
Lab
69
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
assay_title!
CRISPR RNA-seq
pCHi-C
files.file_type!
bam
month_released!
February, 2023
BIOSAMPLE
ASSAY
73 results
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ChIP-seq
ATAC-seq
WGBS
total RNA-seq
Capture-C
Hi-C
RNA microarray
RRBS
tissue
subcutaneous abdominal adipose tissue
36
3
adipose tissue
2
1
1
subcutaneous adipose tissue
1
1
islet of Langerhans
1
omental fat pad
1
in vitro differentiated cells
adipocyte
14
7
1
osteoblast
1
1
primary cell
brain pericyte
1
cardiac fibroblast
1
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