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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
ChIP-seq
16
ATAC-seq
3
single cell RNA-seq
1
Hi-C
1
total RNA-seq
Assay category
40
DNA binding
16
DNA accessibility
4
Transcription
1
3D chromatin structure
Target of assay
28
transcription factor
10
control
2
RNA binding protein
2
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
4
August, 2018
4
October, 2022
3
June, 2018
3
March, 2023
1
August, 2022
Available data
46
fastq
45
bam
35
bed narrowPeak
35
bigBed narrowPeak
35
bigWig
2
bed bed3+
Organism
61
Homo sapiens
Biosample type
28
cell line
28
tissue
5
primary cell
Organ
27
blood
27
bodily fluid
14
kidney
11
pancreas
7
spleen
5
epithelium
1
adipose tissue
1
connective tissue
1
liver
Project
61
AMP
Genome assembly (visualization)
49
GRCh38
38
hg19
Lab
47
AMP-T2D consortium
14
Katalin Susztak, Upenn
Audit category:
1
inconsistent control
assay_title!
CRISPR RNA-seq
shRNA RNA-seq
BIOSAMPLE
ASSAY
61 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
Hi-C
total RNA-seq
cell line
GM12878
27
HepG2
1
tissue
kidney
11
3
spleen
7
islet of Langerhans
6
adipose tissue
1
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
pancreatic acinar cell
1
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