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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
64
single cell RNA-seq
49
total RNA-seq
17
ChIP-seq
13
DNase-seq
6
snATAC-seq
1
FAIRE-seq
1
Hi-C
1
RRBS
Assay category
113
Transcription
95
DNA accessibility
17
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
20
histone
20
histone modification
broad histone mark
10
narrow histone mark
6
control
1
RNA binding protein
1
transcription factor
Date released
128
August, 2021
47
September, 2023
14
May, 2023
13
April, 2019
13
June, 2019
5
February, 2021
4
October, 2019
2
July, 2019
1
December, 2019
Available data
88
bed narrowPeak
64
xls
62
txt
31
bam
24
bigWig
22
bigBed narrowPeak
13
bed bed3+
13
bed broadPeak
13
bigBed broadPeak
5
csv
5
tsv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
227
Homo sapiens
Biosample type
227
tissue
Organ
227
kidney
Project
180
AMP
47
KPMP
Genome assembly (visualization)
98
GRCh38
26
hg19
Lab
142
Katalin Susztak, Upenn
47
KPMP
38
AMP-T2D consortium
Audit category:
5
audit script error
assay_title!
CRISPR RNA-seq
month_released!
October, 2022
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
227 results
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Clear Filters
ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
DNase-seq
snATAC-seq
FAIRE-seq
Hi-C
RRBS
tissue
kidney
75
64
49
17
13
6
1
1
1
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