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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ATAC-seq
4
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
12
DNA accessibility
4
Transcription
Date released
315
November, 2017
153
May, 2021
122
February, 2021
86
August, 2021
68
August, 2017
61
November, 2018
46
December, 2017
39
February, 2018
38
October, 2019
28
December, 2018
23
January, 2019
23
March, 2020
22
February, 2023
21
November, 2019
6
January, 2018
6
November, 2020
3
March, 2023
2
December, 2019
1
August, 2018
1
May, 2020
1
October, 2022
Available data
5
bed bed3
4
bed bed3+
3
bed bedgraph
3
bigWig
3
txt
2
bed narrowPeak
Organism
21
Homo sapiens
Biosample type
tissue
primary cell
16
in vitro differentiated cells
6
cell line
Organ
13
connective tissue
1
epithelium
1
pancreas
Project
17
AMP
5
T1D
Genome assembly (visualization)
12
hg19
Lab
14
AMP-T2D consortium
5
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
5
inconsistent ontology term
assay_title!
CRISPR RNA-seq
biosample_type!
primary cell
tissue
BIOSAMPLE
ASSAY
22 results
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Clear Filters
ATAC-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR genome editing followed by sgRNA sequencing
in vitro differentiated cells
chondrocyte
5
immature adipocyte
2
2
adipocyte
1
1
preadipocyte
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
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cell line
EndoC_BH1
3
2
1
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