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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
total RNA-seq
19
ATAC-seq
10
ChIP-seq
6
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
Hi-C
Assay category
36
Transcription
20
DNA accessibility
10
DNA binding
1
3D chromatin structure
Target of assay
27
histone
histone modification
14
narrow histone mark
13
broad histone mark
9
control
4
transcription factor
3
RNA binding protein
3
nucleotide modification
1
chromatin remodeller
Date released
26
February, 2021
24
May, 2021
6
November, 2019
6
November, 2020
5
December, 2017
4
March, 2020
2
August, 2021
2
October, 2019
1
February, 2023
Available data
48
bam
43
bigWig
37
tsv
6
bed narrowPeak
5
fastq
3
bigBed narrowPeak
2
tagAlign
1
bedpe bed3+
1
hic
Organism
75
Homo sapiens
Biosample type
340
primary cell
67
cell line
15
tissue
9
in vitro differentiated cells
Organ
386
liver
76
epithelium
75
pancreas
67
heart
66
artery
66
blood vessel
66
vasculature
60
blood
60
bodily fluid
60
connective tissue
25
embryo
19
kidney
1
adipose tissue
1
mammary gland
Project
74
AMP
2
T1D
Genome assembly (visualization)
45
hg19
42
GRCh38
Lab
70
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
67
inconsistent ontology term
assay_title!
CRISPR RNA-seq
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
76 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
Hi-C
cell line
EndoC_BH1
33
19
3
6
2
1
1
glomerular visceral epithelial cell
1
1
in vitro differentiated cells
hepatocyte
3
Hepatic endoderm
2
pancreatic PP cell
2
endothelial cell
1
intermediate endothelial cell
1
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