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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
total RNA-seq
23
ChIP-seq
19
ATAC-seq
6
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
Hi-C
Assay category
36
Transcription
23
DNA binding
20
DNA accessibility
1
3D chromatin structure
Target of assay
27
histone
27
histone modification
narrow histone mark
13
broad histone mark
9
control
4
transcription factor
3
RNA binding protein
3
nucleotide modification
1
chromatin remodeller
Date released
26
February, 2021
24
May, 2021
12
December, 2017
12
November, 2019
6
November, 2020
4
March, 2020
2
August, 2021
2
October, 2019
1
February, 2023
Available data
61
bam
56
bigWig
37
tsv
19
bed narrowPeak
12
fastq
10
bigBed narrowPeak
2
tagAlign
1
bedpe bed3+
1
hic
Organism
88
Homo sapiens
Biosample type
371
primary cell
73
cell line
16
in vitro differentiated cells
15
tissue
Organ
402
liver
89
epithelium
85
pancreas
81
connective tissue
67
heart
66
artery
66
blood vessel
66
vasculature
60
blood
60
bodily fluid
29
embryo
19
kidney
1
adipose tissue
1
mammary gland
Project
87
AMP
2
T1D
Genome assembly (visualization)
58
hg19
55
GRCh38
Lab
83
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
73
inconsistent ontology term
assay_title!
CRISPR RNA-seq
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
89 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
Hi-C
cell line
EndoC_BH1
33
9
19
6
2
1
1
glomerular visceral epithelial cell
1
1
in vitro differentiated cells
hepatocyte
10
Hepatic endoderm
2
pancreatic PP cell
2
endothelial cell
1
intermediate endothelial cell
1
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