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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
438
ChIP-seq
71
total RNA-seq
10
ATAC-seq
6
pCHi-C
1
DNase-seq
1
Hi-C
1
MPRA
1
WGBS
Assay category
438
DNA binding
71
Transcription
11
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
349
transcription factor
89
recombinant protein
68
control
63
RNA binding protein
30
chromatin remodeller
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
70
February, 2021
61
November, 2018
28
December, 2018
23
January, 2019
15
October, 2019
8
August, 2021
6
March, 2020
1
January, 2018
1
May, 2020
1
October, 2022
Available data
519
bam
452
bigWig
427
fastq
369
bed narrowPeak
348
bigBed narrowPeak
76
tsv
58
bed broadPeak
58
bigBed broadPeak
20
tagAlign
3
tar
1
bed bed3
1
bed bed3+
1
bed bedMethyl
1
bigBed bedMethyl
1
txt
Organism
528
Homo sapiens
Biosample type
1436
tissue
529
cell line
296
primary cell
244
in vitro differentiated cells
7
stem cell
Organ
370
liver
pancreas
73
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
61
blood
61
bodily fluid
17
kidney
8
embryo
1
mammary gland
Project
529
AMP
Genome assembly (visualization)
457
hg19
409
GRCh38
Lab
529
AMP-T2D consortium
34
Bing Ren, UCSD
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
15
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
assay_title!
CRISPR RNA-seq
organ_slims!
connective tissue
pancreas
BIOSAMPLE
ASSAY
529 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
DNase-seq
Hi-C
MPRA
WGBS
cell line
HepG2
360
5
1
2
1
1
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
1
H1-hESC
8
RCC 7860 HIF1a re-expression
4
1
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