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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
143
ChIP-seq
134
total RNA-seq
42
ATAC-seq
4
GRO-seq
2
Capture-C
2
Hi-C
2
single cell RNA-seq
1
DNase-seq
1
pCHi-C
Assay category
143
DNA binding
136
Transcription
43
DNA accessibility
2
3D chromatin structure
Target of assay
112
histone
112
histone modification
56
broad histone mark
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
121
May, 2021
52
August, 2017
35
August, 2021
31
February, 2018
30
December, 2017
26
February, 2021
16
February, 2023
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
248
bam
217
bigWig
127
tsv
108
fastq
92
bed narrowPeak
28
tagAlign
21
bed bed3+
12
bigBed narrowPeak
7
bed bedgraph
5
bed bed3
3
bedpe bed3+
3
txt
2
hic
1
bed broadPeak
1
bigBed broadPeak
Organism
331
Homo sapiens
Biosample type
tissue
972
primary cell
633
cell line
331
in vitro differentiated cells
4
stem cell
Organ
81
connective tissue
21
embryo
16
epithelium
10
liver
2
pancreas
1
adipose tissue
1
heart
Project
331
AMP
Genome assembly (visualization)
251
hg19
223
GRCh38
4
hg18
Lab
287
AMP-T2D consortium
37
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
106
inconsistent ontology term
2
audit script error
Audit category:
5
missing controlled_by
Audit category:
15
inconsistent control read length
assay_title!
CRISPR RNA-seq
biosample_type!
tissue
month_released!
March, 2020
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
331 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
Capture-C
Hi-C
single cell RNA-seq
DNase-seq
pCHi-C
in vitro differentiated cells
adipocyte
51
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
29
7
6
neural progenitor cell
14
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
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