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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
176
ChIP-seq
134
total RNA-seq
42
ATAC-seq
4
GRO-seq
2
Capture-C
2
pCHi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
176
DNA binding
136
Transcription
43
DNA accessibility
Target of assay
97
histone
97
histone modification
49
broad histone mark
47
narrow histone mark
46
transcription factor
33
control
9
RNA binding protein
2
chromatin remodeller
Date released
127
May, 2021
68
August, 2017
42
August, 2021
39
February, 2018
26
February, 2021
24
December, 2017
16
February, 2023
6
October, 2019
5
November, 2019
4
January, 2018
4
March, 2020
2
December, 2019
Available data
267
bam
239
bigWig
129
tsv
122
fastq
114
bed narrowPeak
37
tagAlign
25
bed bed3+
7
bed bedgraph
bedpe bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
363
Homo sapiens
Biosample type
2752
tissue
682
primary cell
582
cell line
363
in vitro differentiated cells
9
stem cell
Organ
96
connective tissue
29
embryo
epithelium
15
liver
3
pancreas
1
heart
Project
363
AMP
Genome assembly (visualization)
271
hg19
245
GRCh38
4
hg18
Lab
309
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
104
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
16
inconsistent control read length
assay_title!
CRISPR RNA-seq
files.file_type!
bedpe bed3+
organ_slims!
epithelium
BIOSAMPLE
ASSAY
363 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
Capture-C
pCHi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
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