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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
106
ChIP-seq
4
GRO-seq
3
pCHi-C
2
single cell RNA-seq
Assay category
129
Transcription
106
DNA binding
Target of assay
53
histone
53
histone modification
31
transcription factor
28
narrow histone mark
24
broad histone mark
22
control
4
RNA binding protein
2
chromatin remodeller
Date released
79
May, 2021
53
August, 2017
39
February, 2018
29
December, 2017
22
February, 2021
7
August, 2021
4
January, 2018
4
March, 2020
2
December, 2019
2
October, 2019
1
August, 2018
Available data
291
bam
259
bigWig
141
fastq
132
bed narrowPeak
131
tsv
40
tagAlign
25
bed bed3+
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
242
Homo sapiens
Biosample type
1235
tissue
510
primary cell
242
in vitro differentiated cells
194
cell line
8
stem cell
Organ
59
connective tissue
29
embryo
7
epithelium
1
adipose tissue
1
heart
1
liver
Project
242
AMP
Genome assembly (visualization)
215
GRCh38
215
hg19
4
hg18
Lab
242
AMP-T2D consortium
Audit category:
94
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
assay_title!
CRISPR RNA-seq
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
242 results
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total RNA-seq
ChIP-seq
GRO-seq
pCHi-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
adipocyte
4
53
pancreatic endoderm
4
18
1
cardiac precursors (cardiac muscle cell)
19
definitive endodermal cell
2
8
1
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